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Index of Codes used in Sentinel Species Program

1.1 Sex Codes

These sex codes are applied across all fisheries components.

source: RAMP Fish Inventory

Code Description
F Female
M Male
U Unknown or Not Recorded

Blank fields are not allowed.

1.2 Stage Codes

These stage codes are applied across all fisheries components.

source: RAMP Fish Inventory

Code Description
F Fry
J Juvenile
A Adult
U Unknown

Blank fields denote that the stage code was not recorded.

1.3 Age Structure

These age structure codes are applied across all fisheries components.

source: RAMP Fish Inventory

Code Description
FR Fin Ray
SC Scales
SF Scales + Finray
FR/OP Finray + operculum (lethal; 2 aging structures taken)
OT Other (must be specified in comments field)
OF Otolith + Finray
O Otolith

Blank fields denote that the age structure was not taken or was not recorded.

1.4 Species

These species codes are applied across all fisheries components.

sources: Fish Ageing Methods for Alberta Table 1 Mackay et al. (1990); RAMP 2002 Report Appendex XIII Table XIII.1; RAMP 2005 Technical Report Appendix G.1 Table G.1-1; RAMP Fish Inventory Data Sheet from Oct 31, 2006.

Species Abbreviation Common Name Scientific Name
ARGR Arctic grayling Thymallus arcticus
ARLM Arctic lamprey Lampetra japonica
BKTR brook trout Salvelinus fontinalis
BRMN brassy minnow Hybognathus hankinsoni
BRST brook stickleback Culaea inconstans
BLTR bull trout Salvelinus confluentus
BURB burbot Lota lota
CISC cisco Coregonus artedii
EMSH emerald shiner Notropis atherinoides
FLCH flathead chub Platygobio gracilis
FTMN fathead minnow Pimephales promelas
GOLD goldeye Hiodon alsoides
LKCH lake chub Couesius plumbeus
LKTR lake trout Salvelinus namaycush
LKWH lake whitefish Coregonus clupeaformis
LNDC longnose dace Rhinicthys cataractae
LNSC longnose sucker Catostomus catostomus
MNWH mountain whitefish Prosopium williamsoni
NRPK northern pike Esox lucius
NNST ninespike stickleback Pungitius pungitius
NRDC northern redbelly dace Phoxinus eos
PRDC pearl dace Semotilus margarita
SLSC slimy sculpin Cottus cognatus
SPSC spoonhead sculpin Cottus ricei
SPSH spottail shiner Notropis hudonius
SPSC spoonhead sculpin Cottus ricei
RVSH river shiner Notropis blennius
RNTR rainbow trout Oncorhynchus mykiss
TRPR trout-perch Percopsis omiscomaycus
WALL walleye Sander vitreus
WHSC white sucker Catostomus commersoni
YLPR yellow perch Perca flavescens
UNK unknown species -

There should never be any blank species code fields.

1.5 Maturity

source: RAMP Fish Inventory

Code Description
IM Immature
MA Maturing
SD Seasonally Developing
PR Pre-spawning
RP Ripe
SP Spent
RS Resting
RB Reabsorbing
UN Unknown

Blank maturity values are not allowed. Note: Fish Fence has different maturity codes

1.6 Internal Pathology - Mesenteric Fat

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 n/a none
1 n/a < 50 % coverage of mesentery
2 n/a 50 % coverage of mesentery
3 n/a > 50 % coverage of mesentery
4 n/a 100% of mesentery covered

Blank fields denote that the mesenteric fat internal pathology was not recorded.

1.7 Internal Pathology - Liver

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
A 0 normal; solid red or light red colour
C 30 "fatty" liver; "coffee with cream" colour
D 30 nodules in the liver; cysts or nodules
E 30 focal discolouration; distinct localized colour changes
F 30 general discolouration; colour change in whole liver
OT 30 other; any condition not covered above

Blank fields denote that the liver's internal pathology was not recorded.

1.8 Internal Pathology - Spleen

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
B 0 normal; black, very dark red, or red
G 30 granular; rough appearance of spleen
D 30 nodular; containing fistulas or nodules of varying sizes
E 30 enlarged; noticeable enlarged
OT 30 other; any condition not covered above

Blank fields denote that the spleen's internal pathology was not recorded.

1.9 Internal Pathology - Gall Bladder

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 0 normal
1 30 enlarged
2 n/a parasites

Blank fields denote that the gall baldder's internal pathology was not recorded.

1.10 Internal Pathology - Kidney

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
N 0 normal; firm dark red colour, lying relatively flat along vertebral column
S 30 swollen; enlarged or swollen wholly or in part
M 30 mottled; gray discolouration
G 30 granular; granular appearance and texture
U 30 urolithiasis/nephrocalcinosis; white/cream mineral material in tubules
OT 30 other; any condition not covered above

Blank fields denote that the kidney's internal pathology was not recorded.

1.11 Internal Pathology - Parasites

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 0 no observed parasites
1 10 few observed parasites
2 20 moderate parasite infestation
3 30 numerous parasites

Blank fields denote that the parasitic internal pathology was not recorded.

1.12 Maturity

Code Description
SP Spent
PR Pre-Spawn
RP Ripe
UN Unknown

No other maturity codes are acceptable for the fish fence program.

Blank fields denote that the maturity was not recorded. This is different than the "UN" value.

1.13 External Pathology - Parasites

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 0 No observed parasites
1 10 few observed parasites
2 20 moderate parasite infestation
3 30 numerous parasites

Blank fields are interpreted as 0 - no observed parasites or that no value was recorded.

1.14 External Pathology - Eyes

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
N 0 no aberrations; good "clear" eye
B 30 blind; an opaque eye (one or both)
E 30 swollen, protruding eye (one or both)
H 30 hemorrhaging or bleeding in the eye (one or both)
M 30 missing one or both eyes
OT 30 other; any condition not covered above

Blank fields are interpreted as N - no aberrations or that no value was recorded.

1.15 External Pathology - Gills

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
N 0 normal; no apparent aberrations
F 30 frayed; erosion of tips of gill lamellae resulting in "ragged" gills
C 30 clubbed; swelling of the tips of gill lamellae
M 30 marginate; gills with light, discoloured margin along tips the lamellae
P 30 pale; very light in colour
OT 30 other; any condition not covered above

Blank fields are interpreted as N - normal or that no value was recorded.

1.16 External Pathology - Fins

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 0 no active erosion
1 10 light active erosion
2 20 moderate active erosion with some hemorrhaging
3 30 severe active erosion with hemorrhaging

Blank fields are interpreted as 0 - no active erosion or that no value was recorded.

1.17 External Pathology - Opercles

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 0 no shortening
1 30 mild shortening
2 30 severe shortening

Blank fields are interpreted as 0 - no shortening or that no value was recorded.

1.18 External Pathology - Pseudobranchs

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
N 0 normal; flat, containing no aberrations
S 30 swollen; convex in aspect
L 30 lithic; mineral deposits, white, somewhat amorphous spots
I 30 inflamed; redness, hemorrhage, or other
OT 30 other; any condition not covered above

Blank fields are interpreted as N - normal or that no value was recorded.

1.19 External Pathology - Body

source: RAMP 2010; Revised June 2010

Pathology Code Pathology Index Value Variable Condition
0 0 no deformities
1 30 any deformity (provide details)

Blank fields are interpreted as 0 - no deformities or that no value was recorded.

1.20 External Pathology - Skin

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 0 normal; no skin aberrations
1 10 mild skin aberrations
2 20 moderate skin aberrations
3 30 severe skin aberrations

Blank fields are interpreted as 0 - normal or that no value was recorded.

1.21 External Pathology - Thymus

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 0 no hemorrhage
1 10 mild hemorrhage
2 20 moderate hemorrhage
3 30 severe hemorrhage

Blank fields are interpreted as 0 - no hemorrhage or that no value was recorded.

1.22 External Pathology - Hindgut

source: RAMP 2005 Technical Report Appendix G.2 Table G.2-1

Pathology Code Pathology Index Value Variable Condition
0 0 normal; no inflammation or reddening
1 10 slight inflamation or reddening
2 20 moderate inflamation or reddening
3 30 severe inflamation or reddening

Blank fields are interpreted as 0 - normal or that no value was recorded.

 



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